The
C
ircular
S
econdary
S
tructure
B
ase
P
air
P
robabilities
Plot
(
CS
2
BP
2
-Plot
)
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Input sequences
RNAfold
Advanced Options
Assume a circular (instead of linear) RNA molecule.
Incorporate G-Quadruplex formation into the structure prediction algorithm.
Produce structures without lonely pairs (helices of length 1).
Do not allow GU pairs.
Do not allow GU pairs at the end of helices.
Temperature:
[ 0-100 °C ]
[
Example
]
Limitations:
Maximum number of sequences: 10
Maximum sequence length: 200 bases
Sequence
T [ 0-100 °C ]
Sequence
T [ 0-100 °C ]
Generated with
Circos
version 0.69-3 and
RNAfold
version 2.4.6 from the
ViennaRNA
package version 2.0.
Planar graph diagrams
[
show
]
Generated with
VARNA
version 3-93
Arc diagrams
[
show
]
Generated with
VARNA
version 3-93
Circular diagrams
[
show
]
Generated with
VARNA
version 3-93
Statistics
[
show
]
Dot-bracket secondary structure
[
show
]
Folded at
°C
Folded at
°C
Generated with
RNAfold
version 2.4.6 from the
ViennaRNA
package version 2.0.
Alignment report
[
show
]
Generated with
CLUSTALW
version 2.1
The results will be available for download for the next 24 hours.
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